Transcript: lnc-SMIM37-1:4

Basic information

LNCipedia transcript ID: lnc-SMIM37-1:4 
LNCipedia gene ID: lnc-SMIM37-1
Location (hg38): chr2:110214401-110219513
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1224 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004378; NONHSAT073176
Alternative gene names: XLOC_002263; linc-NPHP1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.1537 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM37-1:4 no no no no

Available literature

  1. Crappé (2013), Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NPHP1-1:4
3.1 lnc-NPHP1-1:4
4.0 lnc-NPHP1-1:4
4.1 lnc-NPHP1-1:4
5.0 lnc-NPHP1-1:4
5.1 lnc-EN1-92:4
5.2 lnc-SMIM37-1:4