Transcript: lnc-SMIM32-5:1

Basic information

LNCipedia transcript ID: lnc-SMIM32-5:1 
LNCipedia gene ID: lnc-SMIM32-5
Location (hg38): chr5:136157407-136162789
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1815 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003lbi_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.9542 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM32-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPC7-5:1
4.0 lnc-TRPC7-5:1
4.1 lnc-TRPC7-5:1
5.0 lnc-TRPC7-5:1
5.1 lnc-TIFAB-19:1
5.2 lnc-SMIM32-5:1