Transcript: lnc-SMIM18-1:1

Basic information

LNCipedia transcript ID: lnc-SMIM18-1:1 
LNCipedia gene ID: lnc-SMIM18-1
Location (hg38): chr8:30733603-30739330
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5619 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT125878; FPKM1_group_31131_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.057 non-coding 
CPAT coding probability 3.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM18-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GS1-211B7.1.1-1:13
4.0 lnc-GS1-211B7.1.1-1:13
4.1 lnc-GS1-211B7.1.1-1:13
5.0 lnc-GS1-211B7.1.1-1:13
5.1 lnc-WRN-11:1
5.2 lnc-SMIM18-1:1