Transcript: lnc-SMIM12-1:2

Basic information

LNCipedia transcript ID: lnc-SMIM12-1:2 
LNCipedia gene ID: lnc-SMIM12-1
Location (hg38): chr1:34439616-34685309
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 13896 bp
Exons: 10
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000054624.1|MICT00000007697.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -19.5086 non-coding 
CPAT coding probability 6.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM12-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C1orf212-1:3
5.0 lnc-C1orf212-1:3
5.1 lnc-AK2-14:2
5.2 lnc-SMIM12-1:2