Transcript: lnc-SMIM11A-1:1

Basic information

LNCipedia transcript ID: lnc-SMIM11A-1:1 
LNCipedia gene ID: lnc-SMIM11A-1
Location (hg38): chr21:34407637-34408379
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 402 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029006; NONHSAT081875
Alternative gene names: XLOC_013926; linc-CLIC6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -214.8334 non-coding 
CPAT coding probability 3.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM11A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM165B-1:1
3.1 lnc-FAM165B-1:1
4.0 lnc-FAM165B-1:1
4.1 lnc-FAM165B-1:1
5.0 lnc-FAM165B-1:1
5.1 lnc-SON-14:5
5.2 lnc-SMIM11A-1:1