Transcript: lnc-SMIM10L2B-1:10

Basic information

LNCipedia transcript ID: lnc-SMIM10L2B-1:10 
LNCipedia gene ID: lnc-SMIM10L2B-1
Location (hg38): chrX:135098397-135098600
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 204 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000535837; ENST00000535837.1; LINC00087-201; NONHSAT138676
Alternative gene names: ENSG00000196972; NCRNA00087; ENSG00000196972.6; LINC00087; OTTHUMG00000022468.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 140.1483 coding 
CPAT coding probability 89.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMIM10L2B-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM127B-1:2
3.1 lnc-FAM127B-1:3
4.0 lnc-FAM127B-1:3
4.1 lnc-FAM127B-1:3
5.0 lnc-FAM127B-1:3
5.1 lnc-ETDB-4:10
5.2 lnc-SMIM10L2B-1:10