Transcript: lnc-SMDT1-3:39

Basic information

LNCipedia transcript ID: lnc-SMDT1-3:39 
LNCipedia gene ID: lnc-SMDT1-3
Location (hg38): chr22:42269772-42283402
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7491 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000182057.4|ENCT00000279159.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -32.2538 non-coding 
CPAT coding probability 82.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMDT1-3:39 yes no no no

Available literature

  1. Gao (2014), Differential expression of long noncoding RNA in primary and recurrent nasopharyngeal carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C22orf32-3:23
5.0 lnc-C22orf32-3:23
5.1 lnc-SMDT1-3:16
5.2 lnc-SMDT1-3:39