Transcript: lnc-SMARCA5-4:10

Basic information

LNCipedia transcript ID: lnc-SMARCA5-4:10 
LNCipedia gene ID: lnc-SMARCA5-4
Ensembl Gene ID: ENSG00000251600
Ensembl Transcript ID: ENST00000509873
RefSeq ID: NR_125886
Location (hg38): chr4:143912331-143982454
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1303 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000509873; ENST00000509873.1; RP11-673E1.1-001; OTTHUMT00000364498.1; NONHSAT098577; ENST00000509873.5; NR_125886.1
Alternative gene names: ENSG00000251600; RP11-673E1.1; ENSG00000251600.1; OTTHUMG00000161311.2; ENSG00000251600.5; ENSG00000251600.6; AC139713.2; LOC101927636


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.2148 non-coding 
CPAT coding probability 12.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMARCA5-4:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SMARCA5-1:1
3.1 lnc-SMARCA5-2:1
4.0 lnc-SMARCA5-2:1
4.1 lnc-SMARCA5-2:1
5.0 lnc-SMARCA5-2:1
5.1 lnc-SMAD1-14:11
5.2 lnc-SMARCA5-4:10