Transcript: lnc-SMAD7-1:3

Basic information

LNCipedia transcript ID: lnc-SMAD7-1:3 
LNCipedia gene ID: lnc-SMAD7-1
Location (hg38): chr18:48961068-48976543
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3389 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000266905.1|MICT00000161988.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.9851 non-coding 
CPAT coding probability 4.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMAD7-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SMAD7-1:3
5.0 lnc-SMAD7-1:3
5.1 lnc-DYM-5:1
5.2 lnc-SMAD7-1:3