Transcript: lnc-SMAD5-9:1

Basic information

LNCipedia transcript ID: lnc-SMAD5-9:1 
LNCipedia gene ID: lnc-SMAD5-9
Location (hg38): chr5:136857628-136858342
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 715 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT103969
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.9499 non-coding 
CPAT coding probability 71.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMAD5-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMAD5-9:1
4.0 lnc-SMAD5-9:1
4.1 lnc-SMAD5-9:1
5.0 lnc-SMAD5-9:1
5.1 lnc-EIF4EBP3-67:1
5.2 lnc-SMAD5-9:1