Transcript: lnc-SMAD5-3:1

Basic information

LNCipedia transcript ID: lnc-SMAD5-3:1 
LNCipedia gene ID: lnc-SMAD5-3
Ensembl Gene ID: ENSG00000249803
Ensembl Transcript ID: ENST00000511165
Location (hg38): chr5:136466677-136509028
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 676 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009522; ENST00000511165; ENST00000511165.1; RP11-114H21.2-002; OTTHUMT00000372127.1; NONHSAT103965; ENST00000511165.5
Alternative gene names: XLOC_004568; linc-MYOT-2; ENSG00000249803; RP11-114H21.2; ENSG00000249803.1; OTTHUMG00000163214.1; ENSG00000249803.5; AC112178.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.711 non-coding 
CPAT coding probability 21.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMAD5-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SMAD5-1:2
3.1 lnc-SMAD5-3:1
4.0 lnc-SMAD5-3:1
4.1 lnc-SMAD5-3:1
5.0 lnc-SMAD5-3:1
5.1 lnc-EIF4EBP3-69:2
5.2 lnc-SMAD5-3:1