Transcript: lnc-SLX4IP-37:1

Basic information

LNCipedia transcript ID: lnc-SLX4IP-37:1 
LNCipedia gene ID: lnc-SLX4IP-37
Ensembl Gene ID: ENSG00000270792
Ensembl Transcript ID: ENST00000603985
Location (hg38): chr20:10986675-10994924
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT078618; ENST00000603985.1
Alternative gene names: ENSG00000270792.1; RP11-103J8.1; ENSG00000270792.5; AL050403.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -393.9606 non-coding 
CPAT coding probability 7.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLX4IP-37:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf187-1:6
4.0 lnc-C20orf187-1:6
4.1 lnc-C20orf187-1:6
5.0 lnc-C20orf187-1:6
5.1 lnc-SLX4IP-34:1
5.2 lnc-SLX4IP-37:1