Transcript: lnc-SLX4IP-35:4

Basic information

LNCipedia transcript ID: lnc-SLX4IP-35:4 
LNCipedia gene ID: lnc-SLX4IP-35
Location (hg38): chr20:10864655-10867182
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 268 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00027903; ENST00000421788; ENST00000421788.1; RP4-697P8.2-001; OTTHUMT00000078010.1; NONHSAT078615
Alternative gene names: XLOC_013461; linc-BTBD3-3; ENSG00000232911; RP4-697P8.2; ENSG00000232911.1; OTTHUMG00000031879.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -163.8673 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLX4IP-35:4 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf187-2:3
3.1 lnc-C20orf187-2:3
4.0 lnc-C20orf187-2:3
4.1 lnc-C20orf187-1:17
5.0 lnc-C20orf187-1:17
5.1 lnc-SLX4IP-11:8
5.2 lnc-SLX4IP-35:4