Transcript: lnc-SLITRK6-6:2

Basic information

LNCipedia transcript ID: lnc-SLITRK6-6:2 
LNCipedia gene ID: lnc-SLITRK6-6
Location (hg38): chr13:84882530-84884292
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 442 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022073; NONHSAT034556
Alternative gene names: XLOC_010676; linc-SLITRK1-7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.6544 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLITRK6-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK6-6:2
3.1 lnc-SLITRK6-6:2
4.0 lnc-SLITRK6-6:2
4.1 lnc-SLITRK6-6:2
5.0 lnc-SLITRK6-6:2
5.1 lnc-IRS2-120:2
5.2 lnc-SLITRK6-6:2