Transcript: lnc-SLITRK6-2:1

Basic information

LNCipedia transcript ID: lnc-SLITRK6-2:1 
LNCipedia gene ID: lnc-SLITRK6-2
Location (hg38): chr13:85167168-85169182
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 378 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022078; NONHSAT034562
Alternative gene names: XLOC_010680; linc-SLITRK1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.4678 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLITRK6-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK6-2:1
3.1 lnc-SLITRK6-2:1
4.0 lnc-SLITRK6-2:1
4.1 lnc-SLITRK6-2:1
5.0 lnc-SLITRK6-2:1
5.1 lnc-IRS2-118:1
5.2 lnc-SLITRK6-2:1