Transcript: lnc-SLITRK5-3:1

Basic information

LNCipedia transcript ID: lnc-SLITRK5-3:1 
LNCipedia gene ID: lnc-SLITRK5-3
Location (hg38): chr13:87801036-87803808
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 344 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021582; ENST00000422074; ENST00000422074.1; RP11-471M2.2-001; OTTHUMT00000045418.1; NONHSAT034600
Alternative gene names: XLOC_010464; linc-GPC5-7; ENSG00000223404; RP11-471M2.2; ENSG00000223404.1; OTTHUMG00000017169.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.8238 non-coding 
CPAT coding probability 4.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLITRK5-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK5-3:1
3.1 lnc-SLITRK5-3:1
4.0 lnc-SLITRK5-3:1
4.1 lnc-SLITRK5-3:1
5.0 lnc-SLITRK5-3:1
5.1 lnc-COL4A2-168:2
5.2 lnc-SLITRK5-3:1