Transcript: lnc-SLF1-10:3

Basic information

LNCipedia transcript ID: lnc-SLF1-10:3 
LNCipedia gene ID: lnc-SLF1-10
Location (hg38): chr5:94111731-94251822
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1038 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000076716.1|HBMT00001144658.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.2905 non-coding 
CPAT coding probability 7.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLF1-10:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ANKRD32-10:4
5.0 lnc-ANKRD32-10:4
5.1 lnc-GPR150-41:3
5.2 lnc-SLF1-10:3