Transcript: lnc-SLCO4A1-5:2

Basic information

LNCipedia transcript ID: lnc-SLCO4A1-5:2 
LNCipedia gene ID: lnc-SLCO4A1-5
Location (hg38): chr20:62575597-62577313
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1717 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000593307.1
Alternative gene names: ENSG00000264490.2; WI2-87327B8.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.5026 non-coding 
CPAT coding probability 21.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLCO4A1-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf166-1:2
4.0 lnc-C20orf166-1:2
4.1 lnc-C20orf166-1:2
5.0 lnc-C20orf166-1:2
5.1 lnc-GNAS-44:2
5.2 lnc-SLCO4A1-5:2