Transcript: lnc-SLCO4A1-2:4

Basic information

LNCipedia transcript ID: lnc-SLCO4A1-2:4 
LNCipedia gene ID: lnc-SLCO4A1-2
Location (hg38): chr20:62600130-62601294
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 649 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028585; NONHSAT080763
Alternative gene names: XLOC_013602; linc-SLCO4A1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.5091 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLCO4A1-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf166-1:1
3.1 lnc-C20orf166-2:1
4.0 lnc-C20orf166-2:1
4.1 lnc-C20orf166-2:1
5.0 lnc-C20orf166-2:1
5.1 lnc-GNAS-45:1
5.2 lnc-SLCO4A1-2:4