Transcript: lnc-SLCO1A2-4:4

Basic information

LNCipedia transcript ID: lnc-SLCO1A2-4:4 
LNCipedia gene ID: lnc-SLCO1A2-4
Location (hg38): chr12:20104311-20109902
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 771 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000011418.1|HBMT00000325947.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -3.8614 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLCO1A2-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLCO1A2-4:4
5.0 lnc-SLCO1A2-4:4
5.1 lnc-WBP11-45:1
5.2 lnc-SLCO1A2-4:4