Transcript: lnc-SLCO1A2-4:2

Basic information

LNCipedia transcript ID: lnc-SLCO1A2-4:2 
LNCipedia gene ID: lnc-SLCO1A2-4
Location (hg38): chr12:20104404-20109886
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 666 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020726; NONHSAT027222
Alternative gene names: XLOC_010026; linc-PLCZ1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.8614 non-coding 
CPAT coding probability 10.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLCO1A2-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLCO1A2-3:2
3.1 lnc-SLCO1A2-4:2
4.0 lnc-SLCO1A2-4:2
4.1 lnc-SLCO1A2-4:2
5.0 lnc-SLCO1A2-4:2
5.1 lnc-WBP11-45:4
5.2 lnc-SLCO1A2-4:2