Transcript: lnc-SLC9A3-6:1

Basic information

LNCipedia transcript ID: lnc-SLC9A3-6:1 
LNCipedia gene ID: lnc-SLC9A3-6
Location (hg38): chr5:213898-218148
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3750 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260774.1|ENST00000565521.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 27.981 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC9A3-6:1 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C5orf55-1:2
5.0 lnc-C5orf55-1:2
5.1 lnc-IRX2-57:1
5.2 lnc-SLC9A3-6:1