Transcript: lnc-SLC7A11-1:2

Basic information

LNCipedia transcript ID: lnc-SLC7A11-1:2 
LNCipedia gene ID: lnc-SLC7A11-1
Ensembl Gene ID: ENSG00000249091
Ensembl Transcript ID: ENST00000507220
Location (hg38): chr4:138277115-138281784
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 405 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007853; ENST00000507220; ENST00000507220.1; RP11-733C7.1-001; OTTHUMT00000364381.2; NONHSAT098424
Alternative gene names: XLOC_004093; linc-SLC7A11-1; ENSG00000249091; RP11-733C7.1; ENSG00000249091.1; OTTHUMG00000161283.2; AC093903.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.4121 non-coding 
CPAT coding probability 2.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC7A11-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC7A11-1:2
3.1 lnc-SLC7A11-1:2
4.0 lnc-SLC7A11-1:2
4.1 lnc-SLC7A11-1:2
5.0 lnc-SLC7A11-1:2
5.1 lnc-CLGN-34:3
5.2 lnc-SLC7A11-1:2