Transcript: lnc-SLC6A4-6:1

Basic information

LNCipedia transcript ID: lnc-SLC6A4-6:1 
LNCipedia gene ID: lnc-SLC6A4-6
Ensembl Gene ID: ENSG00000266987
Ensembl Transcript ID: ENST00000591928
Location (hg38): chr17:30144062-30144790
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 360 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT052754; ENST00000591928.1
Alternative gene names: ENSG00000266987.1; RP11-354P11.8; AC104984.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.3146 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC6A4-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC6A4-6:1
4.0 lnc-SLC6A4-6:1
4.1 lnc-SLC6A4-6:1
5.0 lnc-SLC6A4-6:1
5.1 lnc-SLC6A4-6:1
5.2 lnc-SLC6A4-6:1