Transcript: lnc-SLC6A3-4:3

Basic information

LNCipedia transcript ID: lnc-SLC6A3-4:3 
LNCipedia gene ID: lnc-SLC6A3-4
Location (hg38): chr5:1384243-1386361
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2119 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000078998.1|FTMT21800000067.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 3.3534 non-coding 
CPAT coding probability 14.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC6A3-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-325I22.2.1-4:3
5.0 lnc-RP11-325I22.2.1-4:3
5.1 lnc-IRX2-17:3
5.2 lnc-SLC6A3-4:3