Transcript: lnc-SLC6A3-4:2

Basic information

LNCipedia transcript ID: lnc-SLC6A3-4:2 
LNCipedia gene ID: lnc-SLC6A3-4
Location (hg38): chr5:1383029-1386361
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3000 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000078998.1|ENCT00000354340.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 3.3534 non-coding 
CPAT coding probability 13.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC6A3-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-325I22.2.1-4:2
5.0 lnc-RP11-325I22.2.1-4:2
5.1 lnc-IRX2-17:2
5.2 lnc-SLC6A3-4:2