Transcript: lnc-SLC6A17-1:1

Basic information

LNCipedia transcript ID: lnc-SLC6A17-1:1 
LNCipedia gene ID: lnc-SLC6A17-1
Location (hg38): chr1:110148451-110158359
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1992 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: l_111_chr1:110691072-110700176_hela
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.2672 non-coding 
CPAT coding probability 1.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC6A17-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC6A17-1:1
4.0 lnc-SLC6A17-1:1
4.1 lnc-SLC6A17-1:1
5.0 lnc-SLC6A17-1:1
5.1 lnc-KCNC4-5:1
5.2 lnc-SLC6A17-1:1