Transcript: lnc-SLC6A12-1:6

Basic information

LNCipedia transcript ID: lnc-SLC6A12-1:6 
LNCipedia gene ID: lnc-SLC6A12-1
Location (hg38): chr12:197911-203507
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 741 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT025311
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -208.3319 non-coding 
CPAT coding probability 71.15% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC6A12-1:6 no no no no

Available literature

  1. Malouf (2015), Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing., Mol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC6A13-1:4
4.0 lnc-SLC6A12-1:6
4.1 lnc-SLC6A12-1:6
5.0 lnc-SLC6A12-1:6
5.1 lnc-CHD4-126:4
5.2 lnc-SLC6A12-1:6