Transcript: lnc-SLC5A9-1:2

Basic information

LNCipedia transcript ID: lnc-SLC5A9-1:2 
LNCipedia gene ID: lnc-SLC5A9-1
Ensembl Gene ID: ENSG00000223720
Ensembl Transcript ID: ENST00000431986
Location (hg38): chr1:48172972-48206857
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 651 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000431986.2
Alternative gene names: ENSG00000223720.2; RP5-1024N4.2; AL109659.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 39.6442 non-coding 
CPAT coding probability 18.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC5A9-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SLC5A9-1:2
4.1 lnc-SLC5A9-1:2
5.0 lnc-SLC5A9-1:2
5.1 lnc-CMPK1-1:1
5.2 lnc-SLC5A9-1:2