Transcript: lnc-SLC47A2-2:9

Basic information

LNCipedia transcript ID: lnc-SLC47A2-2:9 
LNCipedia gene ID: lnc-SLC47A2-2
Ensembl Gene ID: ENSG00000262769
Ensembl Transcript ID: ENST00000574267
Location (hg38): chr17:19560111-19597922
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 730 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000574267.1; RP11-1113L8.1-001; OTTHUMT00000440979.1; NONHSAT146497
Alternative gene names: ENSG00000262769.1; RP11-1113L8.1; OTTHUMG00000178202.1; AC025627.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 265.3996 coding 
CPAT coding probability 13.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC47A2-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC47A2-3:1
4.0 lnc-SLC47A2-3:1
4.1 lnc-SLC47A2-2:9
5.0 lnc-SLC47A2-2:9
5.1 lnc-B9D1-14:9
5.2 lnc-SLC47A2-2:9