Transcript: lnc-SLC45A4-3:7

Basic information

LNCipedia transcript ID: lnc-SLC45A4-3:7 
LNCipedia gene ID: lnc-SLC45A4-3
Ensembl Gene ID: ENSG00000253307
Ensembl Transcript ID: ENST00000517658
Location (hg38): chr8:141252286-141253292
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 397 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517658.1; RP11-10J21.4-001; OTTHUMT00000378943.1; NONHSAT129413
Alternative gene names: ENSG00000253307.1; RP11-10J21.4; OTTHUMG00000164479.1; AC011676.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.9085 non-coding 
CPAT coding probability 74.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC45A4-3:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR20-4:1
4.0 lnc-SLC45A4-3:7
4.1 lnc-SLC45A4-3:7
5.0 lnc-SLC45A4-3:7
5.1 lnc-SLURP2-16:6
5.2 lnc-SLC45A4-3:7