Transcript: lnc-SLC44A3-2:3

Basic information

LNCipedia transcript ID: lnc-SLC44A3-2:3 
LNCipedia gene ID: lnc-SLC44A3-2
Location (hg38): chr1:94684300-94688319
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1191 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002095; NONHSAT004617
Alternative gene names: XLOC_000303; linc-SLC44A3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.4449 non-coding 
CPAT coding probability 3.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC44A3-2:3 no no no no

Available literature

  1. Shi (2015), Circulating lncRNAs associated with occurrence of colorectal cancer progression., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC44A3-2:3
3.1 lnc-SLC44A3-2:3
4.0 lnc-SLC44A3-2:3
4.1 lnc-SLC44A3-2:3
5.0 lnc-SLC44A3-2:3
5.1 lnc-BTBD8-37:4
5.2 lnc-SLC44A3-2:3