Transcript: lnc-SLC39A8-1:5

Basic information

LNCipedia transcript ID: lnc-SLC39A8-1:5 
LNCipedia gene ID: lnc-SLC39A8-1
Ensembl Gene ID: ENSG00000248161
Ensembl Transcript ID: ENST00000505709
Location (hg38): chr4:102418602-102431282
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 608 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505709.1; RP11-499E18.1-002; OTTHUMT00000363676.1; NONHSAT097584
Alternative gene names: ENSG00000248161.1; RP11-499E18.1; OTTHUMG00000131122.10; ENSG00000248161.5; AC098487.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -244.4087 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A8-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MANBA-1:3
4.0 lnc-SLC39A8-1:5
4.1 lnc-SLC39A8-1:5
5.0 lnc-SLC39A8-1:5
5.1 lnc-SLC9B2-14:4
5.2 lnc-SLC39A8-1:5