Transcript: lnc-SLC39A6-1:6

Basic information

LNCipedia transcript ID: lnc-SLC39A6-1:6 
LNCipedia gene ID: lnc-SLC39A6-1
Location (hg38): chr18:36182662-36187450
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 4270 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260552.1|ENCT00000196866.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -39.8616 non-coding 
CPAT coding probability 35.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A6-1:6 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC39A6-1:6
5.0 lnc-SLC39A6-1:6
5.1 lnc-SMAD2-82:4
5.2 lnc-SLC39A6-1:6