Transcript: lnc-SLC39A11-10:53

Basic information

LNCipedia transcript ID: lnc-SLC39A11-10:53 
LNCipedia gene ID: lnc-SLC39A11-10
RefSeq ID: NR_110876
Location (hg38): chr17:72021851-72025979
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 363 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110876; NR_110876.1
Alternative gene names: FLJ37644; LOC102723505


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -218.8259 non-coding 
CPAT coding probability 2.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-10:53 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC39A11-2:26
4.0 SOX9-AS1:41
4.1 SOX9-AS1:41
5.0 SOX9-AS1:41
5.1 lnc-GRB2-56:53
5.2 lnc-SLC39A11-10:53