Transcript: lnc-SLC39A11-10:44

Basic information

LNCipedia transcript ID: lnc-SLC39A11-10:44 
LNCipedia gene ID: lnc-SLC39A11-10
Location (hg38): chr17:72040647-72057734
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 576 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000234899.5|ENST00000424417.2
Alternative gene names: FLJ37644


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -35.3288 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-10:44 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SOX9-AS1:54
5.0 SOX9-AS1:54
5.1 lnc-GRB2-56:44
5.2 lnc-SLC39A11-10:44