Transcript: lnc-SLC39A11-10:30

Basic information

LNCipedia transcript ID: lnc-SLC39A11-10:30 
LNCipedia gene ID: lnc-SLC39A11-10
RefSeq ID: NR_103738
Location (hg38): chr17:72071042-72116016
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3033 bp
Exons: 7
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT055648; NR_103738; NR_103738.1
Alternative gene names: FLJ37644; SOX9-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.8541 non-coding 
CPAT coding probability 23.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-10:30 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC39A11-2:19
4.0 SOX9-AS1:20
4.1 SOX9-AS1:20
5.0 SOX9-AS1:20
5.1 lnc-GRB2-56:30
5.2 lnc-SLC39A11-10:30