Transcript: lnc-SLC38A5-3:1

Basic information

LNCipedia transcript ID: lnc-SLC38A5-3:1 
LNCipedia gene ID: lnc-SLC38A5-3
Ensembl Gene ID: ENSG00000204620
Ensembl Transcript ID: ENST00000376775
Location (hg38): chrX:48568014-48574860
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 549 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000376775.3
Alternative gene names: ENSG00000204620.3; RP11-1148L6.9; AC115618.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.0026 non-coding 
CPAT coding probability 38.39% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC38A5-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC115618.1-3:1
4.1 lnc-AC115618.1-3:1
5.0 lnc-AC115618.1-3:1
5.1 lnc-PCSK1N-8:1
5.2 lnc-SLC38A5-3:1