Transcript: lnc-SLC38A11-1:2

Basic information

LNCipedia transcript ID: lnc-SLC38A11-1:2 
LNCipedia gene ID: lnc-SLC38A11-1
Location (hg38): chr2:164967938-164984494
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 555 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004485; NONHSAT075242
Alternative gene names: XLOC_002378; linc-SLC38A11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.9063 non-coding 
CPAT coding probability 3.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A11-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC38A11-1:2
3.1 lnc-SLC38A11-1:2
4.0 lnc-SLC38A11-1:2
4.1 lnc-SLC38A11-1:2
5.0 lnc-SLC38A11-1:2
5.1 lnc-SCN9A-13:2
5.2 lnc-SLC38A11-1:2