Transcript: lnc-SLC37A4-1:29

Basic information

LNCipedia transcript ID: lnc-SLC37A4-1:29 
LNCipedia gene ID: lnc-SLC37A4-1
Location (hg38): chr11:119024356-119030863
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5862 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000532085.1; SLC37A4-007; OTTHUMT00000389666.1; NONHSAT024558
Alternative gene names: ENSG00000137700.10; SLC37A4; OTTHUMG00000166352.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 927.9145 coding 
CPAT coding probability 26.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC37A4-1:29 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPS25-1:9
4.0 lnc-RPS25-1:9
4.1 lnc-RPS25-1:9
5.0 lnc-RPS25-1:9
5.1 lnc-SLC37A4-1:9
5.2 lnc-SLC37A4-1:29