Transcript: lnc-SLC35B3-1:1

Basic information

LNCipedia transcript ID: lnc-SLC35B3-1:1 
LNCipedia gene ID: lnc-SLC35B3-1
Ensembl Gene ID: ENSG00000234763
Ensembl Transcript ID: ENST00000415575
Location (hg38): chr6:8341937-8343021
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 746 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011444; ENST00000415575; ENST00000415575.1; RP11-203H2.2-001; OTTHUMT00000039801.1; NONHSAT107632
Alternative gene names: XLOC_005599; linc-EEF1E1; ENSG00000234763; RP11-203H2.2; ENSG00000234763.1; OTTHUMG00000014223.1; AL359378.2; AL359378.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.7391 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35B3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC35B3-1:1
3.1 lnc-SLC35B3-1:1
4.0 lnc-SLC35B3-1:1
4.1 lnc-SLC35B3-1:1
5.0 lnc-SLC35B3-1:1
5.1 lnc-ECI2-217:1
5.2 lnc-SLC35B3-1:1