Transcript: lnc-SLC35A3-1:2

Basic information

LNCipedia transcript ID: lnc-SLC35A3-1:2 
LNCipedia gene ID: lnc-SLC35A3-1
Location (hg38): chr1:100030566-100035632
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5067 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000564623.1; RP4-714D9.5-001; OTTHUMT00000431239.1; NONHSAT004774
Alternative gene names: ENSG00000261254.1; RP4-714D9.5; OTTHUMG00000175888.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.0123 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35A3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIAT1-1:1
4.0 lnc-HIAT1-1:1
4.1 lnc-HIAT1-1:1
5.0 lnc-HIAT1-1:1
5.1 lnc-SLC30A7-31:1
5.2 lnc-SLC35A3-1:2