Transcript: lnc-SLC34A2-1:2

Basic information

LNCipedia transcript ID: lnc-SLC34A2-1:2 
LNCipedia gene ID: lnc-SLC34A2-1
Ensembl Gene ID: ENSG00000248545
Ensembl Transcript ID: ENST00000515188
Location (hg38): chr4:25608711-25619468
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 411 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515188.2
Alternative gene names: ENSG00000248545.2; RP11-302F12.3; AC092436.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -388.9708 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC34A2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SLC34A2-1:2
4.1 lnc-SLC34A2-1:2
5.0 lnc-SLC34A2-1:2
5.1 lnc-USP17L28-106:2
5.2 lnc-SLC34A2-1:2