Transcript: lnc-SLC30A5-5:1

Basic information

LNCipedia transcript ID: lnc-SLC30A5-5:1 
LNCipedia gene ID: lnc-SLC30A5-5
Location (hg38): chr5:68223689-68241650
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1294 bp
Exons: 6
Sources: Nielsen et al.,2014
Alternative transcript names: l_2934_chr5:67519516-67537478_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.796 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC30A5-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-404L6.2.1-3:1
4.0 lnc-RP11-404L6.2.1-3:1
4.1 lnc-RP11-404L6.2.1-3:1
5.0 lnc-RP11-404L6.2.1-3:1
5.1 lnc-NLN-38:1
5.2 lnc-SLC30A5-5:1