Transcript: lnc-SLC2A1-2:1

Basic information

LNCipedia transcript ID: lnc-SLC2A1-2:1 
LNCipedia gene ID: lnc-SLC2A1-2
Ensembl Gene ID: ENSG00000283973
Ensembl Transcript ID: ENST00000640492
Location (hg38): chr1:42959158-42961864
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 759 bp
Exons: 6
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000640492.1
Alternative gene names: ENSG00000283973.1; AC099795.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -335.897 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC2A1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SLC2A1-2:1
5.1 lnc-SLC2A1-2:1
5.2 lnc-SLC2A1-2:1