Transcript: lnc-SLC27A5-3:1

Basic information

LNCipedia transcript ID: lnc-SLC27A5-3:1 
LNCipedia gene ID: lnc-SLC27A5-3
Ensembl Gene ID: ENSG00000269106
Ensembl Transcript ID: ENST00000598051
Location (hg38): chr19:58475355-58475763
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 409 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT068440; ENST00000598051.1
Alternative gene names: ENSG00000269106.1; CTD-2619J13.23; AC012313.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.1374 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC27A5-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC27A5-3:1
4.0 lnc-SLC27A5-3:1
4.1 lnc-SLC27A5-3:1
5.0 lnc-SLC27A5-3:1
5.1 lnc-ZNF772-43:2
5.2 lnc-SLC27A5-3:1