Transcript: lnc-SLC22A31-4:2

Basic information

LNCipedia transcript ID: lnc-SLC22A31-4:2 
LNCipedia gene ID: lnc-SLC22A31-4
Ensembl Gene ID: ENSG00000260659
Ensembl Transcript ID: ENST00000563182
Location (hg38): chr16:89226807-89228692
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 403 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563182.1; RP11-46C24.6-001; OTTHUMT00000430651.1; NONHSAT144489
Alternative gene names: ENSG00000260659.1; RP11-46C24.6; OTTHUMG00000175617.1; AC009113.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.3742 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC22A31-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD11-4:1
4.0 lnc-ANKRD11-4:1
4.1 lnc-ANKRD11-4:1
5.0 lnc-ANKRD11-4:1
5.1 lnc-KLHDC4-47:2
5.2 lnc-SLC22A31-4:2