Transcript: lnc-SLC17A6-2:2

Basic information

LNCipedia transcript ID: lnc-SLC17A6-2:2 
LNCipedia gene ID: lnc-SLC17A6-2
Ensembl Gene ID: ENSG00000255357
Ensembl Transcript ID: ENST00000531858
Location (hg38): chr11:22492112-22502846
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 281 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531858; ENST00000531858.1; RP11-34N19.1-001; OTTHUMT00000387623.1; NONHSAT018395
Alternative gene names: ENSG00000255357; RP11-34N19.1; ENSG00000255357.1; OTTHUMG00000166055.1; AC055878.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.2911 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC17A6-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC17A6-2:2
3.1 lnc-SLC17A6-2:2
4.0 lnc-SLC17A6-2:2
4.1 lnc-SLC17A6-2:2
5.0 lnc-SLC17A6-2:2
5.1 lnc-KCNC1-41:3
5.2 lnc-SLC17A6-2:2