Transcript: lnc-SLC16A11-1:1

Basic information

LNCipedia transcript ID: lnc-SLC16A11-1:1 
LNCipedia gene ID: lnc-SLC16A11-1
Ensembl Gene ID: ENSG00000262089
Ensembl Transcript ID: ENST00000573222
Location (hg38): chr17:6994642-6995189
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 343 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573222.1; RP11-589P10.5-001; OTTHUMT00000439617.1; NONHSAT145313
Alternative gene names: ENSG00000262089.1; RP11-589P10.5; OTTHUMG00000177906.1; AC040977.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -408.067 non-coding 
CPAT coding probability 2.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC16A11-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC16A11-1:1
4.0 lnc-SLC16A11-1:1
4.1 lnc-SLC16A11-1:1
5.0 lnc-SLC16A11-1:1
5.1 lnc-PHF23-7:1
5.2 lnc-SLC16A11-1:1