Transcript: lnc-SLC15A4-1:5

Basic information

LNCipedia transcript ID: lnc-SLC15A4-1:5 
LNCipedia gene ID: lnc-SLC15A4-1
Ensembl Gene ID: ENSG00000276487
Ensembl Transcript ID: ENST00000620052
Location (hg38): chr12:128187934-128191389
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 488 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620052.1
Alternative gene names: ENSG00000276487.1; RP11-417O18.2; AC061709.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -10.4999 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC15A4-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SLC15A4-1:5
4.1 lnc-SLC15A4-1:5
5.0 lnc-SLC15A4-1:5
5.1 lnc-RIMBP2-30:3
5.2 lnc-SLC15A4-1:5